PHYLOGENETIC RELATIONSHIPS OF <i>Calomys sorellus </i> COMPLEX (RODENTIA: CRICETIDAE), WITH THE DESCRIPTION OF TWO NEW SPECIES
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ABSTRACT
We reviewed the phylogenetic relationships of forms assigned to Calomys sorellus based on the Cytochrome b gene sequences and morphological comparisons. We present the first description of the evolutionary relationships within the C. sorellus species complex. The results show a clade with species from lowlands of Eastern of Andes and other clade with Andean species which contains: C. musculinus, C. sorellus and C. lepidus which would be species complex. One of the new species occurs in the Atiquipa Lomas in the coastal desert of southern Peru, and other on the occidental slope of southern Peru in Arequipa and Moquegua. These new species are based upon considering their phenotypic characteristics (size, coloration, pelage), geographic distribution, and molecular phylogeny.
Key words: New species, rodent, Sigmodontinae, biodiversity, Peru.
RESUMEN
Revisamos las relaciones filogenéticas de las formas asignadas a Calomys sorellus basados en secuencias nucleotídicas del gen mitocondrial Citocromo b así como de caracteres morfológicos. Los resultados muestran un clado que agrupa a las formas de las tierras bajas al este de los Andes y a un clado andino, compuesto por: Calomys musculinus, Calomys sorellus y Calomys lepidus que serían complejos de especies. C. sorellus estaría compuesto por al menos cinco especies, tres de ellas fueron previamente definidas como subespecies, a las que agregamos dos especies nuevas. Una de ellas habita en las lomas de Atiquipa en la costa desértica del sur del Perú, y la otra en las vertientes occidentales de los Andes del sur del Perú en Arequipa y Moquegua. Estas nuevas especies están definidas por sus diferencias morfológicas y moleculares y por su tamañp corporal, pelaje y distribución geográfica.
Palabras clave: Especie nueva, roedor, Sigmodontinae, biodiversidad, Perú.
Detalles del artículo
Revista Mexicana de Mastozoología, nueva época por Instituto de Ecología, UNAM. Se distribuye bajo una Licencia Creative Commons Atribución-NoComercial-CompartirIgual 4.0 Internacional.
Basada en una obra en http://revistamexicanademastozoologia.com.mx/ojs/index.php/rmm.
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Almeida, F.C., Bonvicino, C.R.P. Cordeiro-Estrela. 2007. Phylogeny and temporal diversification of Calomys (Rodentia, Sigmodontinae): Implications for the biogeography of an endemic genus of the open/dry biomes of South America. Molecular Phylogenetics and Evolution, 42: 449-466.
Akaike, H. 1974. A new look at the statistical model identification.IEEE Transactions on Automatic Control, 19:716-723.
Anderson, S. 1997. Mammals of Bolivia, taxonomy and distribution. Bulletin of the American Museum of Natural History, 231:1-651.
Baskin, J.A. 1978. Bensonomys, Calomys and the origin of the phyllotine group of Neotropical cricetines (Rodentia: Cricetidae). Journal of Mammalogy, 59:125-135.
Betancourt, J.L., C. Latorre, J.A. Rech, J. Quade, and K.A. Rylander. 2000. A 22,000-yr record of monsoonal precipitation from northern Chile’s Atacama Desert. Science, 289:1542–1546.
Bonvicino, C.R. and F.C. Almeida. 2000. Karyotype, morphology and taxonomic status of Calomys expulsus (Rodentia: Sigmodontinae). Mammalia, 64(3):339-351.
Bonvicino, C.R., J.A. Oliveira and R. Gentile. 2010. A new species of Calomys (Rodentia: Sigmodontinae) from Eastern Brasil. Zootaxa, 2336:19-25.
Cabrera, A. 1961. Catálogo de los mamíferos de América del Sur, Parte II. Revista del Museo Argentino de Ciencias Naturales Bernardino Rivadavia, Ciencias Biológicas, 4:309-732.
Carleton, M.D. and G.G. Musser. 1989. Systematic Studies of Oryzomyine Rodents (Muridae: Sigmodontinae): synopsis of Microryzomys. Bulletin of the American Museum of Natural History, 191:1-83.
Catzeflis, F.M., J.P. Aguilar y J.J. Jaeger. 1992. Muroid rodents: Phylogeny and evolution. Trends in Ecology and Evolution, 7(4):122-126.
Corti, M., M.S. Merani and G. de Villafañe. 1987. Multivariate morphometrics of Vesper mice (Calomys): preliminary assessment of species, population and starin divergence. Z. Saugetierkunde, 52:236-242.
Edwards, S.V., P. Arctander and A.C. Wilson. 1991. Mitochondrial resolution of a deep branch in the genealogical tree for perching birds. Proceedings of the Royal Society of London, Ser. b, 243: 99-107.
Ellerman, J.R. 1941. The families and genera of living rodents. London British Museum of Natural History, 1-690.
Espinoza, M.B., A. Lasserre, M. Plantanida and A.D. Vitullo. 1997. Cytogenetics of vesper mice, Calomys (Sigmodontinae): a new karyotype from Puna region and its implication for chromosomal phylogeny. CMLS Cellular and Molecular Life Sciences, 53:583-586.
Felsenstein, J. 1981. Evolutionary trees from DNA sequences: A maximum likelihood approach. Journal of Molecular Evolution, 17:368-376.
Felsenstein, J. 1985. Confidence limits on phylogenies: a approach using the bootstrap. Evolution, 39:783-791.
Gonzalez-Itigg, R.E., J.L. Patton and C.N. Gardenal. 2007. Analysis of Cytochrome-b nucleotide diversity confirms a recent range expansion in Calomys musculinus (Rodentia, Muridae). Journal of Mammalogy, 88(3):777-783.
Haag, T., V.C. Muschner, L.B. Freitas, L. Flamarion, B. Oliveira, A.R. Langguth and M.S. Mattevi. 2007. Phylogenetic relationships among species of the genus Calomys with emphasis on South American lowland taxa. Journal of Mammalogy, 88(3):769-776.
Hershkovitz, P. 1962. Evolution of Neotropical cricetine rodents (Muridae), with special reference to the Phyllotine group. Fieldiana: Zoology, 46:1-524.
Hall, T.A. 1999. BioEdit: a user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser.: 41: 95-98.
Huelsenbeck, J. P. and F. Ronquist. 2001. MrBayes: Bayesian inference of Phylogeny. Bioinformatics, 17:754-755.
Kimura M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16:111-120.
Kocher, T.D., T.K. Thomas, S.V. Edwards, S. Paabo, F.X. Villablanca and A.C. Wilson. 1989. Dynamics of mitochondrial DNA evolution in mammals: amplification and sequencing with conserved primers. Proccedings of National Academy of Sciences, 86:6196-6200.
Laird, P.W., A. Zijderveld, K. Linders, M.A. Rudnicki, R. Jaenisch, and A. Berns. 1991. Simplified mammalian DNA procedure. Nucleic Acid Research, 19: 4293.
Latorre, C., P.I. Moreno, G. Vargas, A. Maldonado, R. Villa-Martínez, J. Armesto, C. Villagrán, M. Pino, L. Núñez and M. Grosjean. 2007. Late Quaternary environments and palaeoclimate, Pp. 309-328 in: The Geology of Chile. (Gibbons, W. y T. Moreno, eds.). London Geological Society Press, London.
Longmire, J.L., A.K. Lewis, N.C. Brown, J.M. Buckingham, L.C. Clarck, M.D. Jones, L.J. Meincke, J. Meyne, R.L. Ratleef, F.A. Ray, R.P. Wagner and R.K. Moyzis. 1988. Isolation and molecular characterization of a highly polymorphic centromeric tandem repeat in the family Falconidae. Genomics, 2:14-24.
Massoia, E., A. Fornes, R.L. Weinberg y T.G. de Fronza. 1968. Nuevos aportes al conocimiento de las especies bonaerenses del género Calomys (Rodentia-Cricetidae). Revista de Investigaciones Agropecuarias, INTA, Buenos Aires, ser. 1, Biología y Producción Animal, 5(4):63-92.
Mattevi, M.S., T. Haag, L.F.B. Oliveira and A.R. Langgugh. 2005. Chromosome characterization of Brazilian species of Calomys Waterhouse, 1837 from Amazon, Cerrado and Pampa domains (Rodentia, Sigmodontinae). Arquivos de Museu Nacional, 63(1):175-181.
Musser, G.G. and M.D. Carleton. 2005. Superfamily Muroidea. Mammal species of the world: a taxonomic and geographic reference. Baltimore MD: Johns Hopkins University Press.
Olds, N. 1988. A Revision of the Genus Calomys (Rodentia: Muridae). Doctoral Thesis, City University of New York.
Pacheco, V. 2002. Mamíferos del Perú, Pp. 503-550, in: Diversidad y Conservación de los Mamíferos Neotropicales (G. Ceballos y J. Simonetti, eds.). CONABIO-UNAM. México, D.F. CONABIO-UNAM. México, D.F.
Pearson, O.P. 1951. Mammals in the Highlands of Southern Peru. Bull. Mus. Comp. Zool. Harvard, (106):117-174.
Pearson, O.P. y J.L. Patton. 1976. Relationships among South American phyllotine rodents based on chromosome analysis. Journal of Mammalogy, 57: 339–350.
Posada, D. y K.A. Crandall. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics, 14:263-285.
Reig, O.A. 1986. Diversity pattern and differentiation of High Andean rodents. Pp. 404-439, in: High altitude tropical biogeography (F. Vuillemier and M. Monasterio, eds.). New York: Oxford University Press.
Ridgway, R. 1912. Color Standards and color nomenclature. A. Hoen andCompany, Baltimore.
Ronquist, F. and J.P. Huelsenbeck. 2005. MrBayes v3.1. Bayesian Analysis Phylogeny. Florida: School for computational science, University of California.
Rozas, J., J. C. Sánchez-del Barrio, X. Messeguer and R. Rozas. 2003. DnaSP, DNA polymorphism analysis by the coalescence and other methods. Bioinformatics, 19: 2496-2497.
Saiki, R.K., D.H.S., Gelfand, S.J. Stoffel, R. Scharf, G.T. Higuchi Horn, K.B. Mullis, y H.A. Erlich. 1988. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science, 239: 487-491.
Salazar-Bravo, J., J.W. Dragoo, D.S. Tinnin and T.L. Yates. 2001. Phylogeny and evolution of the Neotropical rodent genus Calomys: Inferences from mitochondrial DNA sequence data. Molecular Phylogenetics and Evolution, 20:173-184.
Steppan, S.J. 1995. Revision of the Tribe Phyllotini (Rodentia: Sigmodontinae), with a phylogenetic hypothesis for the Sigmodontinae. Fieldiana (Zool.), 80: 1-112.
Swofford, D.L. 2002. PAUP: Phylogenetic relationships using parsimony. Illinois Natural History Survey, Champaign.
Tamura K., D. Peterson, N. Peterson, G. Stecher, M. Nei and S. Kumar. 2011. MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Molecular Biology and Evolution (In Press).
Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin andD.G. Higgins. 1997. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 25: 4876-4882.
Voss, R.S. 1988. Systematics and ecology of Ichthyomyine rodents (Muroidea): Patterns of morphological evolution in a small adaptive radiation. Bulletin of the American Museum of Natural History, 188:259-493.
Williams, D.F., and M.A. Mares. 1978. A new genus and species of phyllotine rodent (Mammalia: Muridae) from northwestern Argentina. Annals Carnegie Museum, 47:192–221.
Wilson, D.E. y D.A. Reeder (eds). 2005. Mammal Species of the World. A Taxonomic and Geographic Reference, 3rd edition. Johns Hopkins University Press, Baltimore.
Xia, X., Z. Xie, M. Salemi, C. Lu, y W. Yong. 2003. An index of substitution saturation and its application. Molecular Phylogenetics and Evolution, 26, 1-7.